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1

Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants

Thomas Lukow, Peter F Dunfield, Werner Liesack

Journal:

FEMS Microbiology Ecology

Année:

2000

Langue:

english

Fichier:

PDF, 222 KB

english, 2000

2

Activity and community structure of methane-oxidising bacteria in a wet meadow soil

Hans-Peter Horz, Akhilesh S. Raghubanshi, Jürgen Heyer, Claudia Kammann, Ralf Conrad, Peter F. Dunfield

Journal:

FEMS Microbiology Ecology

Année:

2002

Langue:

english

Fichier:

PDF, 430 KB

english, 2002

3

Methanotrophic bacteria in boreal forest soil after fire

Krista Jaatinen, Claudia Knief, Peter F. Dunfield, Kim Yrjälä, Hannu Fritze

Journal:

FEMS Microbiology Ecology

Année:

2004

Langue:

english

Fichier:

PDF, 343 KB

english, 2004

4

Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils

Steffen Kolb, Claudia Knief, Peter F. Dunfield, Ralf Conrad

Journal:

Environmental Microbiology

Année:

2005

Langue:

english

Fichier:

PDF, 188 KB

english, 2005

5

Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand

Matthew B. Stott, Michelle A. Crowe, Bruce W. Mountain, Angela V. Smirnova, Shaobin Hou, Maqsudul Alam, Peter F. Dunfield

Journal:

Environmental Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 860 KB

english, 2008

6

Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants

Thomas Lukow, Peter F Dunfield, Werner Liesack

Journal:

FEMS Microbiology Ecology

Année:

2000

Langue:

english

Fichier:

PDF, 219 KB

english, 2000

7

Activity and community structure of methane-oxidising bacteria in a wet meadow soil

Hans-Peter Horz, Akhilesh S. Raghubanshi, Jürgen Heyer, Claudia Kammann, Ralf Conrad, Peter F. Dunfield

Journal:

FEMS Microbiology Ecology

Année:

2002

Langue:

english

Fichier:

PDF, 424 KB

english, 2002

8

Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production

Balasubramanian Ramakrishnan, Tillmann Lueders, Peter F Dunfield, Ralf Conrad, Michael W Friedrich

Journal:

FEMS Microbiology Ecology

Année:

2001

Langue:

english

Fichier:

PDF, 531 KB

english, 2001

9

The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration

Claudia Knief, Steffen Kolb, Paul L. E. Bodelier, André Lipski, Peter F. Dunfield

Journal:

Environmental Microbiology

Année:

2006

Langue:

english

Fichier:

PDF, 358 KB

english, 2006

10

Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production

Balasubramanian Ramakrishnan, Tillmann Lueders, Peter F. Dunfield, Ralf Conrad, Michael W. Friedrich

Journal:

FEMS Microbiology Ecology

Année:

2001

Langue:

english

Fichier:

PDF, 527 KB

english, 2001

11

Isolation of a Methylocystis strain containing a novel pmoA-like gene

Peter F. Dunfield, Merlin Tchawa Yimga, Svetlana N. Dedysh, Ursula Berger, Werner Liesack, Jürgen Heyer

Journal:

FEMS Microbiology Ecology

Année:

2002

Langue:

english

Fichier:

PDF, 466 KB

english, 2002

12

Roundup Ready® soybean gene concentrations in field soil aggregate size classes

David J. Levy-Booth, Robert H. Gulden, Rachel G. Campbell, Jeff R. Powell, John N. Klironomos, K. Peter Pauls, Clarence J. Swanton, Jack T. Trevors, Kari E. Dunfield

Journal:

FEMS Microbiology Letters

Année:

2009

Langue:

english

Fichier:

PDF, 83 KB

english, 2009

13

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia

Dunfield, Peter F., Yuryev, Anton, Senin, Pavel, Smirnova, Angela V., Stott, Matthew B., Hou, Shaobin, Ly, Binh, Saw, Jimmy H., Zhou, Zhemin, Ren, Yan

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 411 KB

english, 2007

14

Separating the effect of crop from herbicide on soil microbial communities in glyphosate-resistant corn

Miranda M. Hart, Jeff R. Powell, Robert H. Gulden, Kari E. Dunfield, K. Peter Pauls, Clarence J. Swanton, John N. Klironomos, Pedro M. Antunes, Alexander M. Koch, Jack T. Trevors

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 375 KB

english, 2009

15

Effects of genetically modified, herbicide-tolerant crops and their management on soil food web properties and crop litter decomposition

Jeff R. Powell, David J. Levy-Booth, Robert H. Gulden, Wendy L. Asbil, Rachel G. Campbell, Kari E. Dunfield, Allan S. Hamill, Miranda M. Hart, Sylvain Lerat, Robert E. Nurse, K. Peter Pauls, Peter H.

Journal:

Journal of Applied Ecology

Année:

2009

Langue:

english

Fichier:

PDF, 528 KB

english, 2009

16

Detection of transgeniccp4 epspsgenes in the soil food web

Miranda M. Hart, Jeff R. Powell, Robert H. Gulden, David J. Levy-Booth, Kari E. Dunfield, K. Peter Pauls, Clarence J. Swanton, John N. Klironomos, Jack T. Trevors

Journal:

Agronomy for Sustainable Development

Année:

2009

Langue:

english

Fichier:

PDF, 127 KB

english, 2009

17

Methylocella: a gourmand among methanotrophs

Dunfield, Peter F., Dedysh, Svetlana N.

Journal:

Trends in Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 204 KB

english, 2014

18

Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil

Wang, Xiaoqing, Sharp, Christine E., Jones, Gareth M., Grasby, Stephen E., Brady, Allyson L., Dunfield, Peter F., Nojiri, H.

Journal:

Applied and Environmental Microbiology

Année:

2015

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2015

19

Effects of Genetically Modified, Herbicide-Tolerant Crops and Their Management on Soil Food Web Properties and Crop Litter Decomposition

Jeff R. Powell, David J. Levy-Booth, Robert H. Gulden, Wendy L. Asbil, Rachel G. Campbell, Kari E. Dunfield, Allan S. Hamill, Miranda M. Hart, Sylvain Lerat, Robert E. Nurse, K. Peter Pauls, Peter H.

Journal:

Journal of Applied Ecology

Année:

2009

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2009

20

Temporal dynamics of plant-soil feedback and root-associated fungal communities over 100 years of invasion by a non-native plant

Day, Nicola J., Dunfield, Kari E., Antunes, Pedro M., Thrall, Peter

Journal:

Journal of Ecology

Année:

2015

Langue:

english

Fichier:

PDF, 754 KB

english, 2015

21

Isolation of a Methylocystis strain containing a novel pmoA-like gene

Peter F. Dunfield, Merlin Tchawa Yimga, Svetlana N. Dedysh, Ursula Berger, Werner Liesack, Jürgen Heyer

Journal:

FEMS Microbiology Ecology

Année:

2002

Langue:

english

Fichier:

PDF, 470 KB

english, 2002

22

Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes

Svetlana N Dedysh, Peter F Dunfield, Manigee Derakshani, Stephan Stubner, Jürgen Heyer, Werner Liesack

Journal:

FEMS Microbiology Ecology

Année:

2003

Langue:

english

Fichier:

PDF, 376 KB

english, 2003

23

Organic matter, heterotrophic activity, and NO· consumption in soils

Peter F. Dunfield, Roger Knowles

Journal:

Global Change Biology

Année:

1998

Langue:

english

Fichier:

PDF, 324 KB

english, 1998

24

Effect of nitrogen fertilizers and moisture content on CH4and N2O fluxes in a humisol: Measurements in the field and intact soil cores

Peter F. Dunfield, Edward Topp, Christian Archambault, Roger Knowles

Journal:

Biogeochemistry

Année:

1995

Langue:

english

Fichier:

PDF, 1.12 MB

english, 1995

25

A novelpmoAlineage represented by the acidophilic methanotrophic bacteriumMethylocapsa acidophilaB2

Svetlana N. Dedysh, Hans-Peter Horz, Peter F. Dunfield, Werner Liesack

Journal:

Archives of Microbiology

Année:

2001

Langue:

english

Fichier:

PDF, 117 KB

english, 2001

26

Erratum to: A novelpmoAlineage represented by the acidophilic methanotrophic bacteriumMethylocapsa acidophilaB2

Svetlana N. Dedysh, Hans-Peter Horz, Peter F. Dunfield, Werner Liesack

Journal:

Archives of Microbiology

Année:

2002

Fichier:

PDF, 9 KB

2002

27

Regulation of methane oxidation in the facultative methanotroph Methylocella silvestris BL2

Andreas R. Theisen, M. Hanif Ali, Stefan Radajewski, Marc G. Dumont, Peter F. Dunfield, Ian R. McDonald, Svetlana N. Dedysh, Carlos B. Miguez, J. Colin Murrell

Journal:

Molecular Microbiology

Année:

2005

Langue:

english

Fichier:

PDF, 240 KB

english, 2005

28

Response and adaptation of different methanotrophic bacteria to low methane mixing ratios

Claudia Knief, Peter F. Dunfield

Journal:

Environmental Microbiology

Année:

2005

Langue:

english

Fichier:

PDF, 347 KB

english, 2005

29

Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes

Svetlana N Dedysh, Peter F Dunfield, Manigee Derakshani, Stephan Stubner, Jürgen Heyer, Werner Liesack

Journal:

FEMS Microbiology Ecology

Année:

2003

Langue:

english

Fichier:

PDF, 370 KB

english, 2003

30

A reanalysis of phospholipid fatty acids as ecological biomarkers for methanotrophic bacteria

Bodelier, Paul L E, Bär Gillisen, Marie-José, Hordijk, Kees, Sinninghe Damsté, Jaap S, Rijpstra, W Irene C, Geenevasen, Jan A J, Dunfield, Peter F

Journal:

The ISME Journal

Année:

2009

Langue:

english

Fichier:

PDF, 218 KB

english, 2009

31

Cycling of extracellular DNA in the soil environment

David J. Levy-Booth, Rachel G. Campbell, Robert H. Gulden, Miranda M. Hart, Jeff R. Powell, John N. Klironomos, K. Peter Pauls, Clarence J. Swanton, Jack T. Trevors, Kari E. Dunfield

Journal:

Soil Biology and Biochemistry

Année:

2007

Langue:

english

Fichier:

PDF, 845 KB

english, 2007

32

An empirical approach to target DNA quantification in environmental samples using real-time polymerase chain reactions

Robert H. Gulden, David Levy-Booth, Rachel Campbell, Jeff R. Powell, Miranda M. Hart, Kari E. Dunfield, Jack T. Trevors, K. Peter Pauls, John N. Klironomos, Clarence J. Swanton

Journal:

Soil Biology and Biochemistry

Année:

2007

Langue:

english

Fichier:

PDF, 227 KB

english, 2007

33

Electing a candidate: a speculative history of the bacterial phylum OP10

Peter F. Dunfield, Ivica Tamas, Kevin C. Lee, Xochitl C. Morgan, Ian R. McDonald, Matthew B. Stott

Journal:

Environmental Microbiology

Année:

2012

Langue:

english

Fichier:

PDF, 260 KB

english, 2012

34

Methane production and consumption in temperate and subarctic peat soils: Response to temperature and pH

Peter Dunfield, Roger knowles, Rachel Dumont, Tim R. Moore

Journal:

Soil Biology and Biochemistry

Année:

1993

Langue:

english

Fichier:

PDF, 596 KB

english, 1993

35

Effect of glyphosate on the tripartite symbiosis formed by Glomus intraradices, Bradyrhizobium japonicum, and genetically modified soybean

Jeff R. Powell, Rachel G. Campbell, Kari E. Dunfield, Robert H. Gulden, Miranda M. Hart, David J. Levy-Booth, John N. Klironomos, K. Peter Pauls, Clarence J. Swanton, Jack T. Trevors, Pedro M. Antunes

Journal:

Applied Soil Ecology

Année:

2009

Langue:

english

Fichier:

PDF, 433 KB

english, 2009

36

Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia

Huub J. M. Op den Camp, Tajul Islam, Matthew B. Stott, Harry R. Harhangi, Alexander Hynes, Stefan Schouten, Mike S. M. Jetten, Nils-Kåre Birkeland, Arjan Pol, Peter F. Dunfield

Journal:

Environmental Microbiology Reports

Année:

2009

Langue:

english

Fichier:

PDF, 445 KB

english, 2009

37

Encyclopedia of Life Sciences || Methanotrophy in Extreme Environments

Dunfield, Peter F

Année:

2001

Langue:

english

Fichier:

PDF, 252 KB

english, 2001

38

The (d)evolution of methanotrophy in the Beijerinckiaceae—a comparative genomics analysis

Tamas, Ivica, Smirnova, Angela V, He, Zhiguo, Dunfield, Peter F

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 669 KB

english, 2014

39

Distribution and diversity of V errucomicrobia methanotrophs in geothermal and acidic environments

Sharp, Christine E., Smirnova, Angela V., Graham, Jaime M., Stott, Matthew B., Khadka, Roshan, Moore, Tim R., Grasby, Stephen E., Strack, Maria, Dunfield, Peter F.

Journal:

Environmental Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 616 KB

english, 2014

40

Humboldt’s spa: microbial diversity is controlled by temperature in geothermal environments

Sharp, Christine E, Brady, Allyson L, Sharp, Glen H, Grasby, Stephen E, Stott, Matthew B, Dunfield, Peter F

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2014

41

Influence of bioenergy cropJatropha curcasamendment on soil biogeochemistry in a tropical vertisol

Kollah, Bharati, Dubey, Garima, Dunfield, Peter, Mohanty, Santosh Ranjan

Journal:

Mitigation and Adaptation Strategies for Global Change

Année:

2015

Langue:

english

Fichier:

PDF, 393 KB

english, 2015

42

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes

Lee, Kevin C-Y, Morgan, Xochitl C, Dunfield, Peter F, Tamas, Ivica, McDonald, Ian R, Stott, Matthew B

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2014

43

Metagenomics of Hydrocarbon Resource Environments Indicates Aerobic Taxa and Genes to be Unexpectedly Common

An, Dongshan, Caffrey, Sean M., Soh, Jung, Agrawal, Akhil, Brown, Damon, Budwill, Karen, Dong, Xiaoli, Dunfield, Peter F., Foght, Julia, Gieg, Lisa M., Hallam, Steven J., Hanson, Niels W., He, Zhiguo,

Journal:

Environmental Science & Technology

Année:

2013

Langue:

english

Fichier:

PDF, 2.51 MB

english, 2013

44

Methanotrophic bacteria in warm geothermal spring sediments identified using stable-isotope probing

Sharp, Christine E., Martínez-Lorenzo, Azucena, Brady, Allyson L., Grasby, Stephen E., Dunfield, Peter F.

Journal:

FEMS Microbiology Ecology

Année:

2014

Langue:

english

Fichier:

PDF, 501 KB

english, 2014

45

The Paint Pots, Kootenay National Park, Canada — a natural acid spring analogue for Mars 1,2

Grasby, Stephen E., Richards, Barry C., Sharp, Christine E., Brady, Allyson L., Jones, Gareth M., Dunfield, Peter F., Williamson, Marie-Claude

Journal:

Canadian Journal of Earth Sciences

Année:

2013

Fichier:

PDF, 1.20 MB

2013

46

Real-Time Polymerase Chain Reaction Monitoring of Recombinant DNA Entry into Soil from Decomposing Roundup Ready Leaf Biomass

Levy-Booth, David J., Campbell, Rachel G., Gulden, Robert H., Hart, Miranda M., Powell, Jeff R., Klironomos, John N., Pauls, K. Peter, Swanton, Clarence J., Trevors, Jack T., Dunfield, Kari E.

Journal:

Journal of Agricultural and Food Chemistry

Année:

2008

Langue:

english

Fichier:

PDF, 2.56 MB

english, 2008

47

Factors Affecting the Presence and Persistence of Plant DNA in the Soil Environment in Corn and Soybean Rotations

Robert H. Gulden, Sylvain Lerat, Robert E. Blackshaw, Jeff R. Powell, David J. Levy-Booth, Kari E. Dunfield, Jack T. Trevors, K. Peter Pauls, John N. Klironomos and Clarence J. Swanton

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 2.05 MB

english, 2008

48

Factors Affecting the Presence and Persistence of Plant DNA in the Soil Environment in Corn and Soybean Rotations

Gulden, Robert H., Lerat, Sylvain, Blackshaw, Robert E., Powell, Jeff R., Levy-Booth, David J., Dunfield, Kari E., Trevors, Jack T., Pauls, K Peter, Klironomos, John N., Swanton, Clarence J.

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 556 KB

english, 2008

49

Draft Genomes of Gammaproteobacterial Methanotrophs Isolated from Terrestrial Ecosystems: TABLE 1

Hamilton, Richard, Kits, K. Dimitri, Ramonovskaya, Victoria A., Rozova, Olga N., Yurimoto, Hiroya, Iguchi, Hiroyuki, Khmelenina, Valentina N., Sakai, Yasuyoshi, Dunfield, Peter F., Klotz, Martin G., K

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 176 KB

english, 2015

50

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

Eloe-Fadrosh, Emiley A., Paez-Espino, David, Jarett, Jessica, Dunfield, Peter F., Hedlund, Brian P., Dekas, Anne E., Grasby, Stephen E., Brady, Allyson L., Dong, Hailiang, Briggs, Brandon R., Li, Wen-

Journal:

Nature Communications

Année:

2016

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2016